Animal Microbiome
Unlock Comprehensive Microbial Insights in Animal Health and Disease
Leverage Cosmos-Hub for in depth analysis of gut, skin, and environmental microbes across the diverse animal species.
Why Understanding Animal Microbiomes Matters
The microbiome plays a critical role in animal health, affecting digestion, immune function, and disease resistance. Livestock microbiomes influence productivity and food safety, while marine and wild animal microbiomes provide insights into ecological health. Domesticated and model organisms serve as valuable research tools for comparative microbiome studies. Cosmos-Hub enables researchers and veterinarians to harness microbiome data for applications ranging from agricultural improvements to veterinary medicine and wildlife conservation.
Applications in Animal Microbiome Research
Cosmos-Hub’s powerful analytical tools provide actionable insights into animal microbiomes, supporting:
- Optimization of livestock health and productivity through gut microbiome modulation.
- Understanding disease susceptibility and antimicrobial resistance in farm animals.
- Comparative microbiome analysis in domesticated and wild animals.
- Characterization of microbiome adaptations in marine species.
- Use of model organisms to study host-microbiome interactions.


Sample Types in Animal Microbiome Research
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Gut Content Samples
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Livestock: Cows, pigs, sheep, goats – collected from feces or direct intestinal samples to study digestion, health, and antibiotic resistance.
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Poultry: Chickens, turkeys – intestinal and cecal samples for microbial diversity and disease prevention studies.
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Rodents: Mice, rats, cotton rats – used in controlled research models to study the gut microbiome’s impact on disease and therapy.
- Companion Animals: Cats & Dogs - fecal samples to better understand their health and/or impact of novel products on the gut microbiome for pet health and wellness.
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Marine Animal Microbiomes
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Fish Gut Microbiomes: Understanding microbial adaptations in freshwater vs. saltwater environments.
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Coral Reef: Associated Microbiota: Studying marine microbiomes’ role in ecosystem health.
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Skin and Fur Microbiomes
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Domesticated Animals: Dogs, cats, horses – analyzing skin microbiota to study dermatological health and disease susceptibility.
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Livestock and Poultry: Examining microbial populations on feathers, fur, and skin for insights into hygiene and biosecurity.
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Model Organism Microbiomes
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Rodents: Mice, rats, cotton rats – controlled microbiome studies for human disease modeling.
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Other Models: Zebrafish, insects – used to explore host-microbe interactions in controlled settings.
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How Cosmos-Hub Helps
Rapid and precise sequencing data analysis to profile bacterial, fungal, and viral communities in animal microbiomes.
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Advanced statistical tools, such as MaAsLin, for exploring microbiome correlations with health outcomes.
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Comprehensive reference databases spanning diverse host-associated microbiomes
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User-friendly visualizations for easy interpretation of microbiome diversity and function.
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Kepler's host-agnostic profiling, ideal for analyzing microbiomes across various animal species and habitats.
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Publications and Success Stories
Real-World Impact of Animal Microbiome Analysis with Cosmos-Hub
- Dysbiosis of the gut microbiome impairs mouse skeletal muscle adaptation to exercise. Valentino, T. R., Vechetti, I. J., Mobley, C. B., Dungan, C. M., Golden, L., Goh, J., & McCarthy, J. J. (2021). The Journal of Physiology, 600(1), 39-58. https://doi.org/10.1113/JP281788
- Investigation into the supplementation of a ferric sillen core-linked polymer on the health and physiological performance of broiler chickens. Sehnal, L., Pristas, P., & Mizrahi, I. (2024). Animal Microbiome, 6(1), 45. https://pubmed.ncbi.nlm.nih.gov/39214059/
Ready to Elevate Your Animal Microbiome Research?
Unlock the power of high-resolution microbiome analysis with Cosmos-Hub.