Oral Microbiome Research Platform

Unlock the future of oral health with Cosmos-Hub’s Oral Microbiome Analysis Services

Our cutting-edge platform provides comprehensive insights into the intricate world of oral microbiome data. Empower your research with the most advanced bioinformatic tools available, tailored for the evolving needs of health professionals and researchers studying the oral microbiome, human oral microbiome, and oral microbiomes.

 

Why Oral Microbiome Research Matters

Understanding the oral microbiome is crucial for advancing oral health and appreciating its broader impact on human health and systemic diseases. At Cosmos-Hub, we democratize human microbiome research, making it accessible for researchers across disciplines. The oral microbiota within the mouth and  mucosa drive essential interactions across the body. 

Unlocking these microbial communities sheds light on connections between oral and systemic health, as well as the development of oral diseases and links to periodontal diseases, cardiovascular disease, and neurodegenerative disease through the oral-systemic axis. Book a Demo to discover how Cosmos-Hub enhances your research into the normal oral microbiome and beyond.

Our Oral Microbiome Data Analysis Services

Harness the power of advanced oral microbiome analysis with our comprehensive bioinformatics pipelines . Analyze oral samples from buccal mucosa, saliva, dental plaque, tongue swabs, and gingival crevicular fluid directly from FASTQ files to profile the interventional changes in bacterial communities. Bioinformatics capabilities include:

 

Long-read and Short-read Amplicon sequencing (16S rRNA)

 

Shotgun Metagenomics for strain-and-species-level  analysis, facilitating identification of pathogenic microorganisms associated with oral disease

 

Long-read and short-read ITS sequencing to assess fungal diversity within oral microbial communities

 

Metabolomics integration, combining microbiome and metabolic data for a holistic view of human health and systemic health

 

Oral Microbiome Study Areas  Enabled by Cosmos-Hub 

Our platform supports research across critical domains, including:
  • Dental caries and periodontal diseases
  • Oral-systemic health connections
  • Animal oral health
  • Salivary diagnostics
  • Pathogen-host interactions in the oral cavity
  • Personalized oral healthcare solutions
  • Impacts of good oral hygiene on the oral microbiome
Gloved hand holding test tube near industrial water treatment facility

Sample Types in Oral Microbiome Research

Our platform supports diverse sample types to ensure comprehensive analysis:

  • Saliva
  • Dental plaque
  • Tongue swabs
  • Gingival crevicular fluid
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Cosmos-Hub Features & Tools For Oral Microbiome Analysis

 

Cosmos-Hub delivers a comprehensive suite of tools and cloud-based solutions that streamline every phase of oral microbiome profiling and analysis. 

Platform Tools and Applications

Tool/Feature

Role in Microbiome Profiling & Analysis

Statistics Toolbox

Create virtual cohorts from categorical/continuous metadata, run custom analyses, and conduct meta-analysis across studies with just a few clicks.

RITA (AI Assistant)

An AI-powered co-pilot that answers complex questions about microbiome data, reveals scientific insights, and assists with study design and manuscript prep.

CHAMP Human Microbiome Profiler

Sensitive, high-resolution taxonomic and functional profiling for human microbiome datasets.

EMU

Long-read amplicon profiling pipeline for marker genes analysis (e.g.,  16S, 18S, ITS) for accurate microbial diversity assessment.

Cosmos-Hub Atlas

Curated global database with 30,000+ public microbiome datasets, enabling comparison, meta-analysis, and new in silico research without sample collection.

Study & Data Management

Integrated dashboard links raw data, metadata, and results; supports team collaboration, data sharing, secure AWS-based storage, and seamless project continuity.

 

The Cosmos-Hub dashboard connects all project components in one secure, cloud-enabled workspace, supporting research teams as they analyze large, complex microbiome datasets. With security and team-based access at its core, Cosmos-Hub empowers researchers to focus on discovery and translational outcomes in oral health, from bioinformatic analysis to study publication.​

 

Ready to Transform Your Oral Microbiome Research?

Join the forefront of oral health research with Cosmos-Hub. Our platform's unique capabilities and user-friendly design make it the ideal choice for researchers aiming to unlock new insights without needing specialized bioinformatics resources.

Book a Demo today to see Cosmos-Hub in action and propel your research forward.

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All of Your Microbiome Studies. One Easy Platform.

Microbiome Profiling

Microbiome Profiling 

 

Industry-leading bioinformatics pipelines thhat let you analyze different types of sequencing data for multiple applications.

 

 
Popular Features
Import fastq's directly via UI or CLI 
Analysis of 16S, ITS & Shotgun data
Short & long-read compatibility 

 

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Statistics Toolbox

Statistical Analysis 

 

Comparative analysis workflows that leverage your study metadata to create virtual cohorts and analyze them with the latest statistical tools and visualizations.

 
Popular Features
Interactive charts & visualizations 
Univariate statistics like LeFSe, Wlicoxon Rank-Sum & PERMANOVA
Multivariate statistics like MaAsLin2 & MaAsLin3
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Integrated Data Management

Study Management 

 

A study dashboards that provides integrated storage of raw data, profiling data, and study metadata for secure and easy access. 

 

 
Popular Features
Easy-to-navigate dashboard
Upload and edit metadata directly
Single-sample reporting & visualization 

 

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Cosmos-Hub Atlas

Cosmos-Hub Atlas

 

A curated database of over 40,000 microbiome samples, with metadata, that users can compare their samples against. 

 

 
Popular Features
Standardized profilings
Curated metadata
Results shared in 2-3 days 
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AI Co-Pilot

AI Co-Pilot 

 

Cosmos-Hub's AI Co-Pilot, RITAi, supports the interpretation of results generated in the software by allowing researchers to make queries like when using their favorite GPT.

 
Popular Features
Publication insights with complete references  
Species Wizard
Support on how to use the Hub 
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Metabolomics (Coming Soon)

Metabolomics Module (Coming Soon) 

Cosmos-Hub is going multi-omics! In 2025, users will be able to import metabolomics data from any provider and conduct their analysis.

 

 
Popular Features
Support for targeted and untargeted metabolomics 
Additional statistics and visualizations
Multi-Omics Support

 

coming soon

Start Your Human Microbiome Research Today

 Unlock the power of high-resolution microbiome analysis with Cosmos-Hub.