Environmental Microbiome Analysis

Investigate Environmental Quality and Productivity with Advanced Microbial Insights

Discover how Cosmos-Hub empowers you to assess environmental quality and productivity through cutting-edge microbiome analysis. Our platform provides comprehensive insights into soil, water, and air microbiomes, crucial for understanding microbial communities and their impact on ecosystems. 

 

Cosmos-Hub Environmental Microbiome Analysis Platform

 

Experience the power of Cosmos-Hub as you advance your environmental microbiome research with a platform designed to make sophisticated microbial community composition analysis effortless and insightful. 

Whether you need to measure microbial diversity, map relative abundance, or assess soil microbial activity across diverse microbial communities, Cosmos-Hub automates complex data analysis so you can focus on discovery.

Benefit from comprehensive service offerings, including end-to-end DNA extraction, sequencing, advanced meta-analysis, and AI-powered data interpretation. With this data, you can track soil microbiomes, detect changes in nutrient availability, assess biotic and abiotic stresses, and optimize plant growth, soil carbon storage, and restoration efforts. Comparative studies let you evaluate microbial community structures across thousands of samples and understand how intrinsic and extrinsic factors affect ecosystem resilience and human health. 

With Cosmos-Hub’s intuitive interface and secure environment, you streamline every step of your environmental microbiome projects, from initial soil surface sampling to the analysis of beneficial microorganisms. You receive actionable insights for decision-making, helping you lead in sustainability, conservation, and breakthroughs in agriculture, water management, and climate response.

Unmatched Features and Benefits

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No-Code Platform

Democratizes microbiome analysis for all researchers.

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Integrated Workflow

End-to-end profiling, statistics, and AI interpretation.

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RITA AI Co-Pilot

AI-powered data interpretation with scientific referencing.

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Atlas Database

Access 40,000+ samples for comparative meta-analysis.

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Enterprise Security

AWS-based solution with secure team sharing and MFA. 

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Multi-Omics Support

Handles short- and long-read data, 16S, shotgun metagenomics, ITS, and metabolomics.

Why Soil, Water, and Air Research  Matters

Microbes in soil and water are foundational to both agricultural productivity and environmental sustainability. Healthy soil microbiomes enrich crop yields and biodiversity, while clean water ensures the health of aquatic life and the broader ecosystem.

CosmosID-Hub facilitates the integration of microbial insights from these resources, enabling better management and conservation practices. By understanding and improving the microbial health of soil and water, researchers can significantly impact food security, water quality, and ecological diversity.

Applications in Soil and Water Microbiology 

Cosmos-Hub’s advanced tools provide crucial insights into the microbiomes of both soil and water. This analysis is essential for:

  • Enhancing agricultural yields through optimized soil health.
  • Improving water quality management for conservation and regulatory compliance.
  • Studying the interplay between soil and water ecosystems to develop integrated management strategies that support sustainability.



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Sample Types in Environmental Microbiome Research

How Cosmos-Hub Enhances Environmental Microbial Monitoring

 

Quick and accurate processing of sequencing data to uncover bacterial and fungal profiles from samples.

 

Advanced statistics tools like MaAsLin for longitudinal and complex study data.

 

Advanced statistics tools like MaAsLin for longitudinal and complex study data.

 

KEPLER's host-agnostic profiling makes it ideal for studying microbiomes across diverse soil and water types species.

Publications and Success Stories

 

Real-World Impact of Soil Microbiome Analysis with Cosmos-Hub

All of Your Microbiome Studies. One Easy Platform.

Microbiome  Profiling

Microbiome Profiling 

 

Industry-leading bioinformatics pipelines thhat let you analyze different types of sequencing data for multiple applications.

 


 
Popular Features
Import fastq's directly via UI or CLI 
Analysis of 16S, ITS & Shotgun data
Short & long-read compatibility 

 

Statistics  Toolbox

Statistical Analysis 

 

Comparative analysis workflows that leverage your study metadata to create virtual cohorts and analyze them with the latest statistical tools and visualizations.


 
Popular Features
Interactive charts & visualizations 
Univariate statistics like LeFSe, Wlicoxon Rank-Sum & PERMANOVA
Multivariate statistics like MaAsLin2 & MaAsLin3
Integrated Data  Management

Study Management 

 

A study dashboards that provides integrated storage of raw data, profiling data, and study metadata for secure and easy access. 

 


 
Popular Features
Easy-to-navigate dashboard
Upload and edit metadata directly
Single-sample reporting & visualization 

 

Cosmos-Hub  Atlas

Cosmos-Hub Atlas

 

A curated database of over 40,000 microbiome samples, with metadata, that users can compare their samples against. 

 


 
Popular Features
Standardized profilings
Curated metadata
Results shared in 2-3 days 
AI  Co-Pilot

AI Co-Pilot 

 

Cosmos-Hub's AI Co-Pilot, RITAi, supports the interpretation of results generated in the software by allowing researchers to make queries like when using their favorite GPT.


 
Popular Features
Publication insights with complete references  
Species Wizard
Support on how to use the Hub 
Metabolomics  (Coming Soon)

Metabolomics Module (Coming Soon) 

Cosmos-Hub is going multi-omics! In 2025, users will be able to import metabolomics data from any provider and conduct their analysis.

 


 
Popular Features
Support for targeted and untargeted metabolomics 
Additional statistics and visualizations
Multi-Omics Support

 

Ready to Advance Your Soil Microbiome Research?

 Unlock the power of high-resolution microbiome analysis with Cosmos-Hub.

Frequently Asked Questions