Infant Microbiome Analysis Platform

Explore Early-Life Microbiome Development with Advanced Metagenomics

Discover the potential of Cosmos-Hub for comprehensive infant microbiome analysis, designed to propel clinical studies, nutritional product development, and early-life interventions.

 

 

How Cosmos-Hub Supports Infant Microbiome Research

Cosmos-Hub is tailored to advance data analytics into the infant microbiome, offering research teams the ability to conduct high-resolution profiling and comparisons of microbial communities with unmatched precision and speed. 

Research teams benefit from sensitive and accurate taxonomic profiling, functional characterization, and metabolic pathway exploration specifically tailored to infant stool, skin, and breast milk samples. Cosmos-Hub’s streamlined reporting and customizable analytics ensure rapid turnaround and actionable insights, supporting clinical trials, nutritional formulation studies, and foundational science in immune and metabolic development.

Key Features:

  • No-Code Platform: Cloud-based software requiring no specialized bioinformatics knowledge
  • Integrated Workflow: End-to-end profiling, statistics, storage, and AI interpretation
  • RITA AI Co-Pilot: AI-powered data interpretation with scientific referencing
  • Atlas Database: Access to 40,000+ samples for comparative meta-analysis
  • Enterprise Security: AWS-based solution with secure team sharing and MFA
  • Multi-Omics Support: Handles 16S, shotgun metagenomics, ITS, and metabolomics analysis
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Shotgun Metagenomics and CHAMP Profiling

Cutting-edge infant microbiome analysis is transforming our understanding of how the infant gut microbiome develops and influences health and disease throughout the first year of life. By using shotgun metagenomics approaches and the precise CHAMP profiler, researchers can track microbial composition, relative abundance, and beneficial bacteria such as Bifidobacterium Breve in the infant gut.

These tools reveal the impact of variables like mode of delivery, breast milk/formula feeding, and antibiotic exposure on microbial colonization, shaping the gut-brain axis, immune system development, and the overall implications for infant health and neurocognitive outcomes, as shown in studies by supported by Cmbio . Note links below…

Our shotgun metagenomics services provide high-resolution insights into the human microbiome. Using our proprietary CHAMP profiler—the most sensitive and accurate human microbiome profiler available—we offer detailed taxonomic and functional profiling to help researchers explore how microbial communities influence human health.

a photo of two cmbio laboratory workers while testing within our microbiological labs
 

Functional Profiling

Delving into functional profiling of the infant gut microbiome is essential for understanding how microbial contributions support immune system maturation, gut health, and the development of the central nervous system during infancy.

This approach reveals how gut microbes and infant gut bacteria, equipped to produce short-chain fatty acids and metabolize human milk oligosaccharides, interact with dietary and environmental exposures—such as preterm birth, maternal stress, and antibiotic exposure—to influence health outcomes and disease risk in human infants. Insights from the infant intestinal microbiota and adult gut microbiota highlight the importance of microbial functional diversity in the gastrointestinal tract, contributing to healthy gut microbiome ecology and immune responses.

an infant laying on their back

Why Infant Microbiome Research Matters

The infant microbiome critically shapes early-life health, immunity, and long-term developmental outcomes. From breastfeeding and infant formula to delivery methods and environmental exposures, understanding microbial composition and function during infancy provides essential insights for clinical interventions, nutritional formulations, and personalized pediatric care.

Cosmos-Hub enables researchers to deeply explore infant microbiomes, empowering impactful research in digestive health, metabolic and immune system development, allergy prevention, and nutritional supplementation.

Applications in Infant Microbiome Research 

Cosmos-Hub’s state-of-the-art microbiome profiling tools, including our CHAMP Human profiler, support comprehensive exploration of the infant gut microbiome. Key research areas include:

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Popular Sample Types

 

Sample Type

Core Insights Provided

Key Features & Applications

Stool

Gut microbial composition, SCFA production, impact of delivery mode, formula/breastfeeding, allergy risk, immune/metabolic development 

Taxonomic/functional profiling, clinical trial support, metabolic pathway analysis

Skin

Microbiome shifts with emollient use, atopic dermatitis risk, impact of NICU environment 

Skin health tracking, rare disease monitoring, environmental microbiome exposure studies

Breast Milk

HMO-driven microbial modulation, transmission of beneficial bacteria, maternal-infant strain tracking 

Mother-to-infant microbial transfer mapping, nutritional formulation research, HMO studies

Publications and Success Stories

 

Real-World Impact of Human Microbiome Analysis with Cosmos-Hub

Cosmos-Hub has been instrumental in numerous studies exploring human microbiomes. Here are some key publications highlighting its impact:

All of Your Microbiome Studies. One Easy Platform.

Microbiome  Profiling

Microbiome Profiling 

 

Industry-leading bioinformatics pipelines thhat let you analyze different types of sequencing data for multiple applications.

 


 
Popular Features
Import fastq's directly via UI or CLI 
Analysis of 16S, ITS & Shotgun data
Short & long-read compatibility 

 

Statistics  Toolbox

Statistical Analysis 

 

Comparative analysis workflows that leverage your study metadata to create virtual cohorts and analyze them with the latest statistical tools and visualizations.


 
Popular Features
Interactive charts & visualizations 
Univariate statistics like LeFSe, Wlicoxon Rank-Sum & PERMANOVA
Multivariate statistics like MaAsLin2 & MaAsLin3
Integrated Data  Management

Study Management 

 

A study dashboards that provides integrated storage of raw data, profiling data, and study metadata for secure and easy access. 

 


 
Popular Features
Easy-to-navigate dashboard
Upload and edit metadata directly
Single-sample reporting & visualization 

 

Cosmos-Hub  Atlas

Cosmos-Hub Atlas

 

A curated database of over 40,000 microbiome samples, with metadata, that users can compare their samples against. 

 


 
Popular Features
Standardized profilings
Curated metadata
Results shared in 2-3 days 
AI  Co-Pilot

AI Co-Pilot 

 

Cosmos-Hub's AI Co-Pilot, RITAi, supports the interpretation of results generated in the software by allowing researchers to make queries like when using their favorite GPT.


 
Popular Features
Publication insights with complete references  
Species Wizard
Support on how to use the Hub 
Metabolomics  (Coming Soon)

Metabolomics Module (Coming Soon) 

Cosmos-Hub is going multi-omics! In 2025, users will be able to import metabolomics data from any provider and conduct their analysis.

 


 
Popular Features
Support for targeted and untargeted metabolomics 
Additional statistics and visualizations
Multi-Omics Support

 

Start Your Human Microbiome Research Today

 Unlock the power of high-resolution microbiome analysis with Cosmos-Hub.